An educational tutorial and working demonstration pipeline for RNA-seq analysis including an introduction to: cloud computing, next generation sequence file formats, reference genomes, gene annotation ...

We are a research-led school with a reputation for excellent teaching and courses with real-world impact. We are based across four sites, comprising more than 2000 students and 190 specialist staff ...

Gene co-expression networks are a powerful type of analysis to construct gene groupings based on transcriptomic profiling. Co-expression networks make it possible to discover modules of genes whose ...

Co-expression analysis has been widely used to elucidate the functional architecture of genes under different biological processes. Such analysis, however, requires substantial knowledge about ...

If you're not in the above directory, then relocate yourself to it. Now, create a Trinotate/ directory and relocate to it. We'll use this as our Trinotate computation workspace. TransDecoder is a tool ...

Frequency Modulation (or FM) synthesis is a simple and powerful method for creating and controlling complex spectra, introduced by John Chowning of Stanford University around 1973. In its simplest ...

Recent advances in high-throughput cDNA sequencing (RNA-seq) can reveal new genes and splice variants and quantify expression genome-wide in a single assay. The volume and complexity of data from ...